Publications including work performed in the frame of iGE3.
Alphabetical order of first authors' names

2021

  • Allais-Bonnet A, Hintermann A, Deloche MC, Cornette R, Bardou P, Naval-Sanchez M, Pinton A, Haruda A, Grohs C, Zakany J, Bigi D, Medugorac I, Putelat O, Greyvenstein O, Hadfield T, Jemaa SB, Bunevski G, Menzi F, Hirter N, Paris JM, Hedges J, Palhiere I, Rupp R, Lenstra JA, Gidney L, Lesur J, Schafberg R, Stache M, Wandhammer MD, Arbogast RM, Guintard C, Blin A, Boukadiri A, Rivière J, Esquerré D, Donnadieu C, Danchin-Burge C, Reich CM, Riley DG, van Marle-Koster E, Cockett N, Hayes BJ, Drögemüller C, Kijas J, Pailhoux E, Tosser-Klopp G, Duboule D, Capitan A. Analysis of polycerate mutants reveals the evolutionary co-option of HOXD1 for horn patterning in bovidae. Mol Biol Evol. 2021 May 19;38(6):2260-2272. Pubmed
  • Allen GE, Panasenko OO, Villanyi Z, Zagatti M, Weiss B, Pagliazzo L, Huch S, Polte C, Zahoran S, Hughes CS, Pelechano V, Ignatova Z, Collart MA. Not4 and Not5 modulate translation elongation by Rps7A ubiquitination, Rli1 moonlighting, and condensates that exclude eIF5A. Cell Rep. 2021 Aug 31;36(9):109633. Pubmed
  • Antonarakis SE, Holoubek A, Rapti M, Rademaker J, Meylan J, Iwaszkiewicz J, Zoete V, Wilson C, Taylor J, Ansar M, Borel C, Menzel O, Kuželová K, Santoni FA. Dominant monoallelic variant in the PAK2 gene causes Knobloch syndrome type 2. Hum Mol Genet. 2021 Mar 9:ddab026. Online ahead of print. Pubmed
  • Bertiaux E, Balestra AC, Bournonville L, Louvel V, Maco B, Soldati-Favre D, Brochet M, Guichard P, Hamel V. Expansion microscopy provides new insights into the cytoskeleton of malaria parasites including the conservation of a conoid. PLoS Biol. 2021 Mar 11;19(3):e3001020. Pubmed
  • Cardoso YP, Jardim de Queiroz L, Bahechar IA, Posadas PE, Montoya-Burgos JI. Multilocus phylogeny and historical biogeography of Hypostomus shed light on the processes of fish diversification in La Plata Basin. Sci Rep. 2021 Mar 3;11(1):5073. Pubmed
  • Dagenais P, Hensman S, Haechler V, Milinkovitch MC. Elephants evolved strategies reducing the biomechanical complexity of their trunk. Curr Biol. 2021 Aug 20:S0960-9822(21)01133-7. Online ahead of print. Pubmed
  • Di D, Nunes JM, Jiang W, Sanchez-Mazas A. Like wings of a bird: functional divergence and complementarity between HLA-A and HLA-B molecules. Mol Biol Evol. 2021 Apr 13;38(4):1580-1594. Pubmed
  • Garcia A, Dunoyer-Geindre S, Fish RJ, Neerman-Arbez M, Reny JL, Fontana P. Methods to investigate miRNA function: focus on platelet reactivity. Thromb Haemost. 2021 Apr;121(4):409-421. Pubmed
  • Guerreiro A, De Sousa F, Liaudet N, Ivanova D, Eskat A, Meraldi P. WDR62 localizes katanin at spindle poles to ensure synchronous chromosome segregation. J Cell Biol. 2021 Aug 2;220(8):e202007171. Pubmed
  • Hannich JT, Loizides-Mangold U, Sinturel F, Harayama T, Vandereycken B, Saini C, Gosselin P, Brulhart-Meynet MC, Robert M, Chanon S, Durand C, Paz Montoya J, David FPA, Guessous I, Pataky Z, Golay A, Jornayvaz FR, Philippe J, Dermitzakis ET, Brown SA, Lefai E, Riezman H, Dibner C. Ether lipids, sphingolipids and toxic 1-deoxyceramides as hallmarks for lean and obese type 2 diabetic patients. Acta Physiol (Oxf). 2021 May;232(1):e13610. Pubmed
  • Istvan M, Rahban R, Dananche B, Senn A, Stettler E, Multigner L, Nef S, Garlantézec R. Maternal occupational exposure to endocrine-disrupting chemicals during pregnancy and semen parameters in adulthood: results of a nationwide cross-sectional study among Swiss conscripts. Hum Reprod. 2021 Jun 18;36(7):1948-1958. Pubmed
  • Iwasaki M, Lopez-Molina L. Arabidopsis thaliana mature endosperm dissection and isolation of genomic DNA from mature seed tissues. Methods Mol Biol. 2021;2250:239-243. Pubmed
  • Jaumouillé E, Koch R, Nagoshi E. Uncovering the roles of clocks and neural transmission in the resilience of Drosophila circadian network. Front Physiol. 2021 May 26;12:663339. Pubmed
  • Lemopoulos A, Montoya-Burgos JI. From scales to armor: Scale losses and trunk bony plate gains in ray-finned fishes. Evol Lett. 2021 Mar 23;5(3):240-250. Pubmed
  • Lentini G, Ben Chaabene R, Vadas O, Ramakrishnan C, Mukherjee B, Mehta V, Lunghi M, Grossmann J, Maco B, Visentin R, Hehl AB, Korkhov VM, Soldati-Favre D. Structural insights into an atypical secretory pathway kinase crucial for Toxoplasma gondii invasion. Nat Commun. 2021 Jun 18;12(1):3788. Pubmed
  • Li Y, Simmler LD, Van Zessen R, Flakowski J, Wan JX, Deng F, Li YL, Nautiyal KM, Pascoli V, Lüscher C. Synaptic mechanism underlying serotonin modulation of transition to cocaine addiction. Science. 2021 Sep 10;373(6560):1252-1256. Pubmed
  • Loizides-Mangold U, Petrenko V, Dibner C. Circadian lipidomics: analysis of lipid metabolites around the clock. Methods Mol Biol. 2021;2130:169-183. Pubmed
  • Machado Almeida P, Lago Solis B, Stickley L, Feidler A, Nagoshi E. Neurofibromin 1 in mushroom body neurons mediates circadian wake drive through activating cAMP-PKA signaling. Nat Commun. 2021 Oct 1;12(1):5758. Pubmed
  • Mancini V, Maeder J, Bortolin K, Schneider M, Schaer M, Eliez S. Long-term effects of early treatment with SSRIs on cognition and brain development in individuals with 22q11.2 deletion syndrome. Transl Psychiatry. 2021 May 29;11(1):336. Pubmed
  • Mayère C, Neirijnck Y, Sararols P, Rands CM, Stévant I, Kühne F, Chassot AA, Chaboissier MC, Dermitzakis ET, Nef S. Single-cell transcriptomics reveal temporal dynamics of critical regulators of germ cell fate during mouse sex determination. FASEB J. 2021 Apr;35(4):e21452. Pubmed
  • Mendel M, Delaney K, Pandey RR, Chen KM, Wenda JM, Vågbø CB, Steiner FA, Homolka D, Pillai RS. Splice site m6A methylation prevents binding of U2AF35 to inhibit RNA splicing. Cell. 2021 Jun 10;184(12):3125-3142.e25. Pubmed
  • Podolec R, Demarsy E, Ulm R. Perception and signaling of ultraviolet-B radiation in plants. Annu Rev Plant Biol. 2021 Jun 17;72:793-822. Pubmed
  • Podolec R, Lau K, Wagnon TB, Hothorn M, Ulm R. A constitutively monomeric UVR8 photoreceptor confers enhanced UV-B photomorphogenesis. Proc Natl Acad Sci U S A. 2021 Feb 9;118(6):e2017284118. Pubmed
  • Prosée RF, Wenda JM, Özdemir I, Gabus C, Delaney K, Schwager F, Gotta M, Steiner FA. Transgenerational inheritance of centromere identity requires the CENP-A N-terminal tail in the C. elegans maternal germ line. PLoS Biol. 2021 Jul 6;19(7):e3000968. Pubmed
  • Quilodrán CS, Currat M, Montoya-Burgos JI. Air temperature influences early Covid-19 outbreak as indicated by worldwide mortality. Sci Total Environ. 2021 Oct 20;792:148312. Pubmed
  • Sandini C, Zöller D, Schneider M, Tarun A, Armondo M, Nelson B, Amminger PG, Yuen HP, Markulev C, Schäffer MR, Mossaheb N, Schlögelhofer M, Smesny S, Hickie IB, Berger GE, Chen EY, de Haan L, Nieman DH, Nordentoft M, Riecher-Rössler A, Verma S, Thompson A, Yung AR, McGorry PD, Van De Ville D, Eliez S. Characterization and prediction of clinical pathways of vulnerability to psychosis through graph signal processing. Elife. 2021 Sep 27;10:e59811. Pubmed
  • Shukla V, Han JP, Cléard F, Lefebvre-Legendre L, Gully K, Flis P, Berhin A, Andersen TG, Salt DE, Nawrath C, Barberon M. Suberin plasticity to developmental and exogenous cues is regulated by a set of MYB transcription factors. Proc Natl Acad Sci U S A. 2021 Sep 28;118(39):e2101730118. Pubmed
  • Shyian M, Shore D. Approaching protein barriers: Emerging mechanisms of replication pausing in eukaryotes. Front Cell Dev Biol. 2021 May 28;9:672510. Pubmed
  • Sinturel F, Gos P, Petrenko V, Hagedorn C, Kreppel F, Storch KF, Knutti D, Liani A, Weitz C, Emmenegger Y, Franken P, Bonacina L, Dibner C, Schibler U. Circadian hepatocyte clocks keep synchrony in the absence of a master pacemaker in the suprachiasmatic nucleus or other extrahepatic clocks. Genes Dev. 2021 Mar 1;35(5-6):329-334. Pubmed
  • Somm E, Montandon SA, Loizides-Mangold U, Gaïa N, Lazarevic V, De Vito C, Perroud E, Bochaton-Piallat ML, Dibner C, Schrenzel J, Jornayvaz FR. The GLP-1R agonist liraglutide limits hepatic lipotoxicity and inflammatory response in mice fed a methionine-choline deficient diet. Transl Res. 2021 Jan;227:75-88. Pubmed
  • Stingi A, Cirillo L. SARS-CoV-2 infection and cancer: Evidence for and against a role of SARS-CoV-2 in cancer onset. Bioessays. 2021 Aug;43(8):e2000289. Pubmed
  • Suknovic N, Tomczyk S, Colevret D, Perruchoud C, Galliot B. The ULK1 kinase, a necessary component of the pro-regenerative and anti-aging machinery in Hydra. Mech Ageing Dev. 2021 Mar;194:111414. Pubmed
  • Vanzan L, Soldati H, Ythier V, Anand S, Braun SMG, Francis N, Murr R. High throughput screening identifies SOX2 as a super pioneer factor that inhibits DNA methylation maintenance at its binding sites. Nat Commun. 2021 Jun 7;12(1):3337. Pubmed
  • Vilar R, Lukowski SW, Garieri M, Di Sanza C, Neerman-Arbez M, Fish RJ. Chemical modulators of fibrinogen production and their impact on venous thrombosis. Thromb Haemost. 2021 Apr;121(4):433-448. Pubmed
  • Vogg MC, Buzgariu W, Suknovic NS, Galliot B. Cellular, metabolic, and developmental dimensions of whole-body regeneration in Hydra. Cold Spring Harb Perspect Biol. 2021 Jul 6:a040725. Online ahead of print. Pubmed
  • Weiss B, Allen GE, Kloehn J, Abid K, Jaquier-Gubler P, Curran JA. eIF4E3 forms an active eIF4F complex during stresses (eIF4FS) targeting mTOR and re-programs the translatome. Nucleic Acids Res. 2021 May 21;49(9):5159-5176. Pubmed